PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02327.30
Common NameJCGZ_15604, LOC105630439
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ZF-HD
Protein Properties Length: 283aa    MW: 31053.7 Da    PI: 7.865
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02327.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1031.9e-3246102257
    ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 
                    + v YkeClkNhAa+lGg a+DGCgEfmps++++ +++++lkC ACgCHRnFHRr++
  Jcr4S02327.30  46 TVVSYKECLKNHAATLGGLALDGCGEFMPSPSASlSDPTSLKCVACGCHRNFHRRDS 102
                    5789*****************************99********************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257747.0E-2148101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.5E-2648101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.6E-2950101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.50350101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.58E-15169244IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-26171244IPR009057Homeodomain-like
TIGRFAMsTIGR015652.8E-26182239IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDLTTRNPQT KTPDSDTDTE TPLQTHLSRA LSLTNGSPSF HPPPQTVVSY KECLKNHAAT  60
LGGLALDGCG EFMPSPSASL SDPTSLKCVA CGCHRNFHRR DSLQPPPVVA FHWSTSSPSP  120
GQTSSGPSHS DPNSPASPIP QQSVYPSAPH MLLALSTGHS GPFEENHHHQ MNHPTVMNPH  180
GKKGARTKFT EEQKEKMHLF AEKLGWKMMR ANDEKIVEEF CSEVGVKRNV FKVWMHNNKH  240
RKEKGGCDIN KKIVNFNCDS NYGSYQIESK IASLDDGSSP SSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-181862462180ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067639.10.0PREDICTED: zinc-finger homeodomain protein 11-like
SwissprotQ9SEZ16e-59ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A067KYG40.0A0A067KYG4_JATCU; Uncharacterized protein
STRINGPOPTR_0010s17650.14e-92(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.13e-56zinc finger homeodomain 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]